propy.GetProteinFromUniprot¶
Download the protein sequence from the uniprot website.
You can only need input a protein ID or prepare a file (ID.txt) related to ID. You can obtain a .txt (ProteinSequence.txt) file saving protein sequence you need.
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propy.GetProteinFromUniprot.
GetProteinSequence
(ProteinID: str) → str[source]¶ Get the protein sequence from the uniprot website by ID.
Parameters: ProteinID (str) – indicating ID such as “P48039” or “Q9NQ39”. Returns: protein_sequence Return type: str Examples
>>> protein = GetProteinSequence(ProteinID="Q9NQ39")
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propy.GetProteinFromUniprot.
GetProteinSequenceFromTxt
(path: str, openfile: str, savefile: str)[source]¶ Get the protein sequence from the uniprot website by the file containing ID.
Parameters: - path (str) – a directory path containing the ID file such as “/home/orient/protein/”
- openfile (str) – the ID file such as “proteinID.txt”
- savefile (str) – the file saving the obtained protein sequences such as “protein.txt”