propy3
stable
User Guide
Installation
Download proteins from Uniprot
Obtaining the property from the AAindex database
Calculating protein descriptors
API Reference
propy.AAComposition
propy.AAIndex
propy.Autocorrelation
propy.CTD
propy.GetProteinFromUniprot
propy.GetSubSeq
propy.ProCheck
propy.PseudoAAC
propy.PyPro
propy.QuasiSequenceOrder
propy3
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Index
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Index
A
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C
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E
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G
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I
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M
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N
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P
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R
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S
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V
A
aakeys (propy.AAIndex.Record attribute)
AALetter (propy.PyPro.GetProDes attribute)
C
CalculateAAComposition() (in module propy.AAComposition)
CalculateAADipeptideComposition() (in module propy.AAComposition)
CalculateAutoTotal() (in module propy.Autocorrelation)
CalculateC() (in module propy.CTD)
CalculateComposition() (in module propy.CTD)
CalculateCompositionCharge() (in module propy.CTD)
CalculateCompositionHydrophobicity() (in module propy.CTD)
CalculateCompositionNormalizedVDWV() (in module propy.CTD)
CalculateCompositionPolarity() (in module propy.CTD)
CalculateCompositionPolarizability() (in module propy.CTD)
CalculateCompositionSecondaryStr() (in module propy.CTD)
CalculateCompositionSolventAccessibility() (in module propy.CTD)
CalculateCTD() (in module propy.CTD)
CalculateD() (in module propy.CTD)
CalculateDipeptideComposition() (in module propy.AAComposition)
CalculateDistribution() (in module propy.CTD)
CalculateDistributionCharge() (in module propy.CTD)
CalculateDistributionHydrophobicity() (in module propy.CTD)
CalculateDistributionNormalizedVDWV() (in module propy.CTD)
CalculateDistributionPolarity() (in module propy.CTD)
CalculateDistributionPolarizability() (in module propy.CTD)
CalculateDistributionSecondaryStr() (in module propy.CTD)
CalculateDistributionSolventAccessibility() (in module propy.CTD)
CalculateEachGearyAuto() (in module propy.Autocorrelation)
CalculateEachMoranAuto() (in module propy.Autocorrelation)
CalculateEachNormalizedMoreauBrotoAuto() (in module propy.Autocorrelation)
CalculateGearyAuto() (in module propy.Autocorrelation)
CalculateGearyAutoAvFlexibility() (in module propy.Autocorrelation)
CalculateGearyAutoFreeEnergy() (in module propy.Autocorrelation)
CalculateGearyAutoHydrophobicity() (in module propy.Autocorrelation)
CalculateGearyAutoMutability() (in module propy.Autocorrelation)
CalculateGearyAutoPolarizability() (in module propy.Autocorrelation)
CalculateGearyAutoResidueASA() (in module propy.Autocorrelation)
CalculateGearyAutoResidueVol() (in module propy.Autocorrelation)
CalculateGearyAutoSteric() (in module propy.Autocorrelation)
CalculateGearyAutoTotal() (in module propy.Autocorrelation)
CalculateMoranAuto() (in module propy.Autocorrelation)
CalculateMoranAutoAvFlexibility() (in module propy.Autocorrelation)
CalculateMoranAutoFreeEnergy() (in module propy.Autocorrelation)
CalculateMoranAutoHydrophobicity() (in module propy.Autocorrelation)
CalculateMoranAutoMutability() (in module propy.Autocorrelation)
CalculateMoranAutoPolarizability() (in module propy.Autocorrelation)
CalculateMoranAutoResidueASA() (in module propy.Autocorrelation)
CalculateMoranAutoResidueVol() (in module propy.Autocorrelation)
CalculateMoranAutoSteric() (in module propy.Autocorrelation)
CalculateMoranAutoTotal() (in module propy.Autocorrelation)
CalculateNormalizedMoreauBrotoAuto() (in module propy.Autocorrelation)
CalculateNormalizedMoreauBrotoAutoAvFlexibility() (in module propy.Autocorrelation)
CalculateNormalizedMoreauBrotoAutoFreeEnergy() (in module propy.Autocorrelation)
CalculateNormalizedMoreauBrotoAutoHydrophobicity() (in module propy.Autocorrelation)
CalculateNormalizedMoreauBrotoAutoMutability() (in module propy.Autocorrelation)
CalculateNormalizedMoreauBrotoAutoPolarizability() (in module propy.Autocorrelation)
CalculateNormalizedMoreauBrotoAutoResidueASA() (in module propy.Autocorrelation)
CalculateNormalizedMoreauBrotoAutoResidueVol() (in module propy.Autocorrelation)
CalculateNormalizedMoreauBrotoAutoSteric() (in module propy.Autocorrelation)
CalculateNormalizedMoreauBrotoAutoTotal() (in module propy.Autocorrelation)
CalculateT() (in module propy.CTD)
CalculateTransition() (in module propy.CTD)
CalculateTransitionCharge() (in module propy.CTD)
CalculateTransitionHydrophobicity() (in module propy.CTD)
CalculateTransitionNormalizedVDWV() (in module propy.CTD)
CalculateTransitionPolarity() (in module propy.CTD)
CalculateTransitionPolarizability() (in module propy.CTD)
CalculateTransitionSecondaryStr() (in module propy.CTD)
CalculateTransitionSolventAccessibility() (in module propy.CTD)
E
extend() (propy.AAIndex.MatrixRecord method)
(propy.AAIndex.Record method)
G
get() (in module propy.AAIndex)
(propy.AAIndex.MatrixRecord method)
(propy.AAIndex.Record method)
GetAAComp() (propy.PyPro.GetProDes method)
GetAAComposition() (in module propy.PseudoAAC)
(in module propy.QuasiSequenceOrder)
GetAAIndex1() (in module propy.AAIndex)
GetAAindex1() (propy.PyPro.GetProDes method)
GetAAIndex23() (in module propy.AAIndex)
GetAAindex23() (propy.PyPro.GetProDes method)
GetALL() (propy.PyPro.GetProDes method)
GetAPAAC() (propy.PyPro.GetProDes method)
GetAPseudoAAC() (in module propy.PseudoAAC)
GetAPseudoAAC1() (in module propy.PseudoAAC)
GetAPseudoAAC2() (in module propy.PseudoAAC)
GetCorrelationFunction() (in module propy.PseudoAAC)
GetCTD() (propy.PyPro.GetProDes method)
GetDPComp() (propy.PyPro.GetProDes method)
GetGearyAuto() (propy.PyPro.GetProDes method)
GetGearyAutop() (propy.PyPro.GetProDes method)
Getkmers() (in module propy.AAComposition)
GetMoranAuto() (propy.PyPro.GetProDes method)
GetMoranAutop() (propy.PyPro.GetProDes method)
GetMoreauBrotoAuto() (propy.PyPro.GetProDes method)
GetMoreauBrotoAutop() (propy.PyPro.GetProDes method)
GetPAAC() (propy.PyPro.GetProDes method)
GetPAACp() (propy.PyPro.GetProDes method)
GetProDes (class in propy.PyPro)
GetProteinSequence() (in module propy.GetProteinFromUniprot)
GetProteinSequenceFromTxt() (in module propy.GetProteinFromUniprot)
GetPseudoAAC() (in module propy.PseudoAAC)
GetPseudoAAC1() (in module propy.PseudoAAC)
GetPseudoAAC2() (in module propy.PseudoAAC)
GetQSO() (propy.PyPro.GetProDes method)
GetQSOp() (propy.PyPro.GetProDes method)
GetQuasiSequenceOrder() (in module propy.QuasiSequenceOrder)
GetQuasiSequenceOrder1() (in module propy.QuasiSequenceOrder)
GetQuasiSequenceOrder1Grant() (in module propy.QuasiSequenceOrder)
GetQuasiSequenceOrder1SW() (in module propy.QuasiSequenceOrder)
GetQuasiSequenceOrder2() (in module propy.QuasiSequenceOrder)
GetQuasiSequenceOrder2Grant() (in module propy.QuasiSequenceOrder)
GetQuasiSequenceOrder2SW() (in module propy.QuasiSequenceOrder)
GetQuasiSequenceOrderp() (in module propy.QuasiSequenceOrder)
GetSequenceOrderCorrelationFactor() (in module propy.PseudoAAC)
GetSequenceOrderCorrelationFactorForAPAAC() (in module propy.PseudoAAC)
GetSequenceOrderCouplingNumber() (in module propy.QuasiSequenceOrder)
GetSequenceOrderCouplingNumberGrant() (in module propy.QuasiSequenceOrder)
GetSequenceOrderCouplingNumberp() (in module propy.QuasiSequenceOrder)
GetSequenceOrderCouplingNumberSW() (in module propy.QuasiSequenceOrder)
GetSequenceOrderCouplingNumberTotal() (in module propy.QuasiSequenceOrder)
GetSOCN() (propy.PyPro.GetProDes method)
GetSOCNp() (propy.PyPro.GetProDes method)
GetSpectrumDict() (in module propy.AAComposition)
GetSubSeq() (propy.PyPro.GetProDes method)
GetSubSequence() (in module propy.GetSubSeq)
GetTPComp() (propy.PyPro.GetProDes method)
grep() (in module propy.AAIndex)
I
init() (in module propy.AAIndex)
init_from_file() (in module propy.AAIndex)
M
MatrixRecord (class in propy.AAIndex)
median() (propy.AAIndex.MatrixRecord method)
(propy.AAIndex.Record method)
N
NormalizeEachAAP() (in module propy.Autocorrelation)
(in module propy.PseudoAAC)
P
propy.AAComposition (module)
propy.AAIndex (module)
propy.Autocorrelation (module)
propy.CTD (module)
propy.GetProteinFromUniprot (module)
propy.GetSubSeq (module)
propy.ProCheck (module)
propy.PseudoAAC (module)
propy.PyPro (module)
propy.QuasiSequenceOrder (module)
ProteinCheck() (in module propy.ProCheck)
R
Record (class in propy.AAIndex)
S
search() (in module propy.AAIndex)
StringtoNum() (in module propy.CTD)
V
Version (propy.PyPro.GetProDes attribute)
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